PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0047400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 513aa    MW: 54827.5 Da    PI: 5.1594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0047400genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-1359105354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+l+P       +K++Ka+ L++++  Ik+L
  Spipo8G0047400  59 KSHSEAERRRRERINAHLSTLRTLIPGT-----GKMDKAALLTEVISRIKEL 105
                     58*************************9.....9****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.08256105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-1159105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-1360107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1360114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-1262111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.31E-469107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGSLHFGDFQ LMRGFPEEVV HGGVAAQTAL VFERERVRAP EKPAKSGLTV EPRAAMALKS  60
HSEAERRRRE RINAHLSTLR TLIPGTGKMD KAALLTEVIS RIKELKTSTT EISQGVNVPA  120
DADEVKVEVE VNGTPCGGGG RGFSIKASLC CADRPELLTD LKQTLLALRL RTVKAEISTV  180
GGRVKNDIVL TCERGGAGDY DTECNIFTNN VHQALKSVLE RASSPPDFSA GSPLSGKRRR  240
LSPPSFPADP SLLTDALGEH LKKICEEVAN DFLDPFSEGC IKGPVSDLSL EQDIIANICK  300
KSKVGHNQGP PDVGALISVP SEREAPAIGQ DGSKEACGML NKNTEVILTA EETKGNGLEL  360
KENPAEASTS SSADGALNTV GRISMLSDSS DSTEENESSS KEVVSPAGFS GDEHDSQGEV  420
AGPNMEDEEE FEVLKLDDGW EHAERCNLPQ TAARDVKNRS YKKKLRGMLS SNLYSLRKKN  480
RAPDADLCNA SAISSSLSLL GSGQKVNHDE PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16469ERRRRE
2236240KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-27bHLH family protein